Index

B

bonus_brush() (Paint4Brains.GUI.ImageViewer.ImageViewer method)

BonusBrush (class in Paint4Brains.GUI.BonusBrush) BrainData (class in Paint4Brains.BrainData)

C

change_kernel() (Paint4Brains.GUI.BonusBrush.BonusBrush method) closeEvent() (Paint4Brains.GUI.ProgressBar.ProgressBar method) current_data_slice (Paint4Brains.BrainData.BrainData attribute)

current_index (Paint4Brains.GUI.SelectLabel.SelectLabel attribute) current_label (Paint4Brains.BrainData.BrainData attribute) current_label_data_slice (Paint4Brains.BrainData.BrainData attribute) current_other_labels_data_slice (Paint4Brains.BrainData.BrainData attribute)

D

disable_drawing() (Paint4Brains.GUI.ImageViewer.ImageViewer method)

disappear() (Paint4Brains.GUI.BonusBrush.BonusBrush method)

E

edit_button1() (Paint4Brains.GUI.ImageViewer.ImageViewer method) edit_button2() (Paint4Brains.GUI.ImageViewer.ImageViewer method) edit_button3() (Paint4Brains.GUI.ImageViewer.ImageViewer method) enable_drawing() (Paint4Brains.GUI.ImageViewer.ImageViewer method)

error_message() (Paint4Brains.GUI.SegmentManager.SegmentManager method) extract() (Paint4Brains.BrainData.BrainData method) (Paint4Brains.GUI.MainWidget.MainWidget method) extraction_probability() (Paint4Brains.GUI.OptionalSliders.OptionalSliders method) Extractor (class in Paint4Brains.Extractor)

F

finished_message() (Paint4Brains.GUI.SegmentManager.SegmentManager method)

full_brain() (Paint4Brains.BrainData.BrainData method) (Paint4Brains.GUI.MainWidget.MainWidget method)

G

get_data_slice() (Paint4Brains.BrainData.BrainData method)

get_label_data_slice() (Paint4Brains.BrainData.BrainData method) get_other_labels_data_slice() (Paint4Brains.BrainData.BrainData method)

H

HistogramWidget (class in Paint4Brains.GUI.HistogramWidget)

I

ImageViewer (class in Paint4Brains.GUI.ImageViewer)

L

load() (Paint4Brains.GUI.MainWindow.MainWindow method) load_and_preprocess() (in module Paint4Brains.Segmenter) load_initial() (Paint4Brains.GUI.MainWindow.MainWindow method)

load_label_data() (Paint4Brains.BrainData.BrainData method) load_pb() (Paint4Brains.Extractor.Extractor method) log_normalization() (Paint4Brains.BrainData.BrainData method)

M

MainWidget (class in Paint4Brains.GUI.MainWidget) MainWindow (class in Paint4Brains.GUI.MainWindow) ModViewBox (class in Paint4Brains.GUI.ModViewBox) mouse_tracker() (Paint4Brains.GUI.MainWidget.MainWidget method)

mouseDoubleClickEvent() (Paint4Brains.GUI.SideView.SideView method) mouseDragEvent() (Paint4Brains.GUI.ModViewBox.ModViewBox method) mouseReleaseEvent() (Paint4Brains.GUI.ImageViewer.ImageViewer method) MultipleViews (class in Paint4Brains.GUI.MultipleViews)

N

new_brush() (Paint4Brains.GUI.ImageViewer.ImageViewer method) new_matrix_size() (Paint4Brains.GUI.BonusBrush.BonusBrush method)

next_label() (Paint4Brains.GUI.ImageViewer.ImageViewer method) normalize_intensity() (Paint4Brains.GUI.MainWidget.MainWidget method)

O

OptionalSliders (class in Paint4Brains.GUI.OptionalSliders)

P

Paint4Brains.BrainData (module) Paint4Brains.GUI.BonusBrush (module) Paint4Brains.GUI.HistogramWidget (module) Paint4Brains.GUI.ImageViewer (module) Paint4Brains.GUI.MainWidget (module) Paint4Brains.GUI.MainWindow (module) Paint4Brains.GUI.ModViewBox (module) Paint4Brains.GUI.MultipleViews (module) Paint4Brains.GUI.OptionalSliders (module) Paint4Brains.GUI.PlaneSelectionButtons (module) Paint4Brains.GUI.ProgressBar (module)

Paint4Brains.GUI.SegmentManager (module) Paint4Brains.GUI.SelectLabel (module) Paint4Brains.GUI.SideView (module) Paint4Brains.GUI.Slider (module) Paint4Brains.Segmenter (module) PlaneSelectionButtons (class in Paint4Brains.GUI.PlaneSelectionButtons) popup_button() (Paint4Brains.GUI.SegmentManager.SegmentManager method) position_as_voxel() (Paint4Brains.BrainData.BrainData method) previous_label() (Paint4Brains.GUI.ImageViewer.ImageViewer method) ProgressBar (class in Paint4Brains.GUI.ProgressBar) ProgressBarThread (class in Paint4Brains.GUI.ProgressBar)

R

recenter() (Paint4Brains.GUI.ImageViewer.ImageViewer method) redo_previous_edit() (Paint4Brains.GUI.ImageViewer.ImageViewer method) refresh_all_images() (Paint4Brains.GUI.SideView.SideView method) refresh_image() (Paint4Brains.GUI.ImageViewer.ImageViewer method) (Paint4Brains.GUI.SideView.SideView method)

reorient() (Paint4Brains.BrainData.BrainData method) revert_to_old_buttons() (Paint4Brains.GUI.MainWidget.MainWidget method) run() (Paint4Brains.Extractor.Extractor method) (Paint4Brains.GUI.ProgressBar.ProgressBarThread method) (Paint4Brains.GUI.SegmentManager.SegmentThread method) run_segmentation() (Paint4Brains.GUI.SegmentManager.SegmentManager method)

S

save() (Paint4Brains.GUI.MainWindow.MainWindow method) save_as() (Paint4Brains.GUI.MainWindow.MainWindow method) save_label_data() (Paint4Brains.BrainData.BrainData method) segment() (Paint4Brains.BrainData.BrainData method) (Paint4Brains.GUI.MainWindow.MainWindow method) (Paint4Brains.Segmenter.Segmenter method) Segmenter (class in Paint4Brains.Segmenter) SegmentManager (class in Paint4Brains.GUI.SegmentManager) SegmentThread (class in Paint4Brains.GUI.SegmentManager) select_label() (Paint4Brains.GUI.ImageViewer.ImageViewer method)

SelectLabel (class in Paint4Brains.GUI.SelectLabel) set_i() (Paint4Brains.GUI.SideView.SideView method) set_label_value() (Paint4Brains.GUI.Slider.Slider method) set_pen() (Paint4Brains.GUI.BonusBrush.BonusBrush method) set_rub() (Paint4Brains.GUI.BonusBrush.BonusBrush method) set_views() (Paint4Brains.GUI.MultipleViews.MultipleViews method) show_initial_message() (Paint4Brains.GUI.SegmentManager.SegmentManager method) SideView (class in Paint4Brains.GUI.SideView) Slider (class in Paint4Brains.GUI.Slider) started_message() (Paint4Brains.GUI.SegmentManager.SegmentManager method) store_edit() (Paint4Brains.BrainData.BrainData method)

T

transform() (in module Paint4Brains.Segmenter)

transparency_set() (Paint4Brains.GUI.OptionalSliders.OptionalSliders method)

U

undo_previous_edit() (Paint4Brains.GUI.ImageViewer.ImageViewer method) undo_transform() (in module Paint4Brains.Segmenter) update0() (Paint4Brains.GUI.MainWidget.MainWidget method) update1() (Paint4Brains.GUI.MainWidget.MainWidget method) update2() (Paint4Brains.GUI.MainWidget.MainWidget method)

update_after_slider() (Paint4Brains.GUI.MainWidget.MainWidget method) update_box() (Paint4Brains.GUI.SelectLabel.SelectLabel method) update_brain() (Paint4Brains.GUI.SelectLabel.SelectLabel method) update_colormap() (Paint4Brains.GUI.ImageViewer.ImageViewer method) update_intensity() (Paint4Brains.GUI.HistogramWidget.HistogramWidget method) (Paint4Brains.GUI.OptionalSliders.OptionalSliders method)

V

view_back_labels() (Paint4Brains.GUI.ImageViewer.ImageViewer method) view_edit_tools() (Paint4Brains.GUI.MainWindow.MainWindow method)

view_histogram() (Paint4Brains.GUI.MainWindow.MainWindow method) view_visualization_tools() (Paint4Brains.GUI.MainWindow.MainWindow method) voxel_as_position() (Paint4Brains.BrainData.BrainData method)

W

wheelEvent() (Paint4Brains.GUI.ImageViewer.ImageViewer method) (Paint4Brains.GUI.MainWidget.MainWidget method)